Papers

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Effects of data transformation and model selection on feature importance in microbiome classification data

Zuzanna Karwowska, Oliver Aasmets, Mait Metspalu, Andres Metspalu, Lili A. Milani, Tõnu Esko, Tomasz Kościółek, Elin Org

Microbiome 2025 cited by 37

Biology & Life Sciences Gut microbiota and health ai assisted importance 4/10 scale stated

Classifying healthy versus diseased individuals from gut microbiome data is difficult due to data sparsity, compositionality, and population-specificity.

Details Source Open-access PDF model: not stated in source

Uncertainty Quantification for Machine Learning‐Based Ionosphere and Space Weather Forecasting: Ensemble, Bayesian Neural Network, and Quantile Gradient Boosting

Randa Natraš, Benedikt S. Soja, Michael F. Schmidt

Space Weather 2023 cited by 17

Physics & Astronomy Ionosphere and magnetosphere dynamics ai assisted importance 4/10 scale stated

ML-based ionosphere and space weather forecasts lacked uncertainty quantification, so the confidence and reliability of their results were unknown.

Details Source Open-access PDF model: Bayesian neural networks, quantile gradien...

A deep learning-based stripe self-correction method for stitched microscopic images

Shu Wang, Xixiang Liu, Yueying Li, Xinquan Sun, Qi Li, Yinhua She, Yixuan Xu, Xingxin Huang et al.

Nature Communications 2023 cited by 36

Biology & Life Sciences Advanced Image Processing Techniques solved importance 4/10 scale stated

Stitched fluorescence microscope images contain stripes and artifacts from optics or specimens that degrade image quality and ruin downstream quantitative analysis.

Details Source Open-access PDF model: SSCOR (deep learning, adversarial self-tra...

Simulated Design–Build–Test–Learn Cycles for Consistent Comparison of Machine Learning Methods in Metabolic Engineering

Paul van Lent, Joep P. J. Schmitz, Thomas Abeel

ACS Synthetic Biology 2023 cited by 54

Biology & Life Sciences Microbial Metabolic Engineering and Bioproduction partially solved importance 4/10 scale stated

No framework existed to consistently test machine learning methods across multiple design-build-test-learn cycles in combinatorial strain optimization.

Details Source Open-access PDF model: gradient boosting, random forest

Advancing Enzyme’s Stability and Catalytic Efficiency through Synergy of Force-Field Calculations, Evolutionary Analysis, and Machine Learning

Antonín Kunka, Sérgio M. Marques, Martin Havlásek, Michal Vasina, Nikola Velatova, Lucia Cengelova, David R. Kovar, Jiřı́ Damborský et al.

ACS Catalysis 2023 cited by 75

Biology & Life Sciences Protein Structure and Dynamics ai assisted importance 4/10 scale stated

Industrial enzymes require thermostability, but designing stable variants of haloalkane dehalogenase DhaA115 is challenging.

Details Source Open-access PDF model: FireProt, PROSS; machine learning (unnamed...

Quantifying the effects of environment and population diversity in multi-agent reinforcement learning

Kevin R. McKee, Joel Z. Leibo, Charlie Beattie, Richard Everett

Autonomous Agents and Multi-Agent Systems 2022 cited by 18

Science & Research Reinforcement Learning in Robotics partially solved importance 4/10 scale stated

Reinforcement learning agents often perform poorly when placed in novel environments or with unfamiliar co-players; the study quantified how training diversity affects this generalization problem.

Details Source Open-access PDF model: not stated in source

Machine learning for the discovery of molecular recognition based on single-walled carbon nanotube corona-phases

Xun Gong, Nicholas Renegar, Retsef Levi, Michael S. Strano

npj Computational Materials 2022 cited by 26

Engineering & Materials Advanced biosensing and bioanalysis techniques partially solved importance 4/10 scale stated

No generalized scheme exists to predict de novo the molecular recognition of DNA-SWCNT corona phases, due to their sequence-dependent three-dimensional complexity.

Details Source Open-access PDF model: not stated in source

Early yield prediction in different grapevine varieties using computer vision and machine learning

Fernando Palacios, María P. Diago, Pedro Melo‐Pinto, Javier Tardáguila

Precision Agriculture 2022 cited by 55

Biology & Life Sciences Smart Agriculture and AI partially solved importance 4/10 scale stated

Predicting grapevine yield early in the season across different varieties to support wine industry yield assessment.

Details Source Open-access PDF model: SegNet and support vector regression (SVR)

Machine Learning on a Robotic Platform for the Design of Polymer–Protein Hybrids

Matthew Tamasi, Roshan A. Patel, Carlos H. Borca, Shashank Kosuri, Heloise Mugnier, Rahul Upadhya, N. Sanjeeva Murthy, Michael E. Webb et al.

Advanced Materials 2022 cited by 177

Engineering & Materials Machine Learning in Materials Science partially solved importance 4/10 scale stated

Designing synthetic copolymers that stabilize proteins is difficult because the chemical and composition space is too vast for rational design.

Details Source Open-access PDF model: active machine learning (specific model no...

Deep Learning Models for Poorly Differentiated Colorectal Adenocarcinoma Classification in Whole Slide Images Using Transfer Learning

Masayuki Tsuneki, Fahdi Kanavati

Diagnostics 2021 cited by 28

Medicine & Health AI in cancer detection ai assisted importance 4/10 scale stated

Identifying poorly differentiated colorectal adenocarcinoma in endoscopic biopsy whole slide images is difficult and could benefit from AI tools for pathologists.

Details Source Open-access PDF model: not stated in source

A Simulation-Data-Based Machine Learning Model for Predicting Basic Parameter Settings of the Plasticizing Process in Injection Molding

Matthias C. Schmid, Dominik Altmann, Georg Steinbichler

Polymers 2021 cited by 18

Engineering & Materials Injection Molding Process and Properties partially solved importance 4/10 scale stated

Finding optimal machine settings for the plasticizing process in injection molding normally requires time-consuming, expensive physical trials.

Details Source Open-access PDF model: Neural network (best among compared superv...

Exoplanet detection using machine learning

Abhishek Malik, Benjamin P. Moster, Christian Obermeier

Monthly Notices of the Royal Astronomical Society 2021 cited by 36

Physics & Astronomy Stellar, planetary, and galactic studies ai assisted importance 4/10 scale stated

Conventional algorithm-based approaches for detecting exoplanets via the transit method needed improvement.

Details Source Open-access PDF model: LightGBM gradient boosting with TSFresh fe...

Particle reconstruction of volumetric particle image velocimetry with the strategy of machine learning

Qi Gao, Shaowu Pan, Hongping Wang, Runjie Wei, Jinjun Wang

Advances in Aerodynamics 2021 cited by 43

Physics & Astronomy Fluid Dynamics and Turbulent Flows solved importance 4/10 scale stated

3D particle reconstruction from limited 2D projections in volumetric PIV is an under-determined inverse problem that iterative methods solve only approximately.

Details Source Open-access PDF model: CNN with geometry-informed features

Deep-learning based denoising and reconstruction of super-resolution structured illumination microscopy images

Zafran Hussain Shah, Marcel W. Muller, Tung-Cheng Wang, Philip Maurice Scheidig, Axel Schneider, Mark Schüttpelz, Thomas R. Huser, Wolfram Schenck

Photonics Research 2021 cited by 96

Biology & Life Sciences Image and Signal Denoising Methods solved importance 4/10 scale stated

Noisy raw images in super-resolution structured illumination microscopy (SR-SIM), e.g. from low excitation power or short exposure, cause reconstruction artifacts.

Details Source Open-access PDF model: RED-Net (residual encoding-decoding convol...

Using machine learning for transient classification in searches for gravitational-wave counterparts

C. Stachie, M. W. Coughlin, Nelson L Christensen, Daniel Muthukrishna

Monthly Notices of the Royal Astronomical Society 2020 cited by 18

Physics & Astronomy Gamma-ray bursts and supernovae ai assisted importance 4/10 scale stated

Large gravitational-wave sky localization regions produce many transient candidates that must be prioritized given restricted telescope time.

Details Source Open-access PDF model: astrorapid (multiband photometric light-cu...

In-situ identification of material batches using machine learning for machining operations

Benjamin Lutz, Dominik Kißkalt, Andreas Mayr, Daniel Regulin, Matteo Pantano, Jörg E. Franke

Journal of Intelligent Manufacturing 2020 cited by 16

Engineering & Materials Advanced machining processes and optimization partially solved importance 4/10 scale stated

Batches of the same specified material differ in machinability, and unidentified differences reduce product quality and raise manufacturing costs.

Details Source Open-access PDF model: not stated in source

The major effects of health-related quality of life on 5-year survival prediction among lung cancer survivors: applications of machine learning

Jin-Ah Sim, Young Ae Kim, Ju Han Kim, Jong Mog Lee, Moon Soo Kim, Young Mog Shim, Jae Ill Zo, Young Ho Yun

Scientific Reports 2020 cited by 63

Medicine & Health Lung Cancer Diagnosis and Treatment ai assisted importance 4/10 scale stated

Predicting 5-year survival among lung cancer survivors, and whether health-related quality of life (HRQOL) data improves prediction beyond clinical and sociodemographic variables.

Details Source Open-access PDF model: decision tree, logistic regression, baggin...