Papers

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Machine Learning to Predict Enzyme–Substrate Interactions in Elucidation of Synthesis Pathways: A Review

Luis Fernando Salas Nuñez, Álvaro Barrera-Ocampo, Paola A. Caicedo, Natalie Cortés, Edison H. Osorio, María Francisca Villegas-Torres, Andrés Fernando González Barrios

Metabolites 2024 cited by 45

Biology & Life Sciences Microbial Metabolic Engineering and Bioproduction ai assisted importance 5/10 scale stated

Experimentally determining enzyme-substrate interactions is slow and costly, and physics-based simulations are too slow for large search spaces.

Details Source Open-access PDF model: support vector machines, neural networks,...

Intelligent Identification and Prediction Mineral Resources Deposit Based on Deep Learning

Le Gao, Kun Wang, Xin Zhang, Chen Wang

Sustainability 2023 cited by 15

Science & Research Geochemistry and Geologic Mapping partially solved importance 5/10 scale stated

Predicting ore deposit locations is hindered by scarce labeled geological images, small irregular features with high image similarity, and hard-to-quantify prospecting factors.

Details Source Open-access PDF model: MFAF (MFCA-Net, SE-Net modules)

Process monitoring and machine learning for defect detection in laser-based metal additive manufacturing

Timothy Herzog, Milan Brandt, Adrian Trinchi, Antonella Sola, Andrey Molotnikov

Journal of Intelligent Manufacturing 2023 cited by 239

Engineering & Materials Additive Manufacturing Materials and Processes ai assisted importance 5/10 scale stated

Laser-based metal additive manufacturing (PBF-LB/M, DED-LB/M) frequently forms defects and existing machines lack closed-loop control, making processes hard to control.

Details Source Open-access PDF model: not stated in source

GAN-TL: Generative Adversarial Networks with Transfer Learning for MRI Reconstruction

Muhammad Yaqub, Jinchao Feng, Shahzad Ahmed, Kaleem Arshid, Muhammad Atif Bilal, Muhammad Pervez Akhter, Muhammad Sultan Zia

Applied Sciences 2022 cited by 28

Medicine & Health Advanced MRI Techniques and Applications partially solved importance 5/10 scale stated

GAN-based MRI reconstruction from under-sampled data normally requires large training sets of raw k-space patient data, which is difficult to gather in clinical practice.

Details Source Open-access PDF model: Generative Adversarial Network with transf...

Hybrid Forecasting Methodology for Wind Power-Photovoltaic-Concentrating Solar Power Generation Clustered Renewable Energy Systems

Simian Pang, Zixuan Zheng, Fan Luo, Xianyong Xiao, Lanlan Xu

Sustainability 2021 cited by 19

Climate & Environment Energy Load and Power Forecasting ai assisted importance 5/10 scale stated

Short-term forecasting of clustered hybrid renewable energy systems (wind, photovoltaic, concentrating solar power) is difficult due to spatial and temporal uncertainties.

Details Source Open-access PDF model: LSTM (long short-term memory network)

Prediction on Domestic Violence in Bangladesh during the COVID-19 Outbreak Using Machine Learning Methods

Md. Murad Hossain, Md. Asadullah, Abidur Rahaman, Md Sipon Miah, Md. Zahid Hasan, Tonmay Paul, Mohammad Amzad Hossain

Applied System Innovation 2021 cited by 41

Research & Humanities Intimate Partner and Family Violence ai assisted importance 5/10 scale stated

Family violence in Bangladesh during the COVID-19 lockdown needed to be forecast to anticipate social harm.

Details Source Open-access PDF model: Random Forest, Logistic Regression, Naive...

Novel machine learning framework for thermal conductivity prediction by crystal graph convolution embedded ensemble

Yajing Sun, Wenping Hu

SmartMat 2021 cited by 25

Engineering & Materials Machine Learning in Materials Science ai assisted importance 5/10 scale stated

Predicting the lattice thermal conductivity of crystal materials is hard because usable datasets are scarce, limiting data-driven materials science.

Details Source Open-access PDF model: crystal graph convolution embedded ensembl...

DeepComplex: A Web Server of Predicting Protein Complex Structures by Deep Learning Inter-chain Contact Prediction and Distance-Based Modelling

Farhan Quadir, Raj S. Roy, Elham Soltanikazemi, Jianlin Jack Cheng

Frontiers in Molecular Biosciences 2021 cited by 21

Biology & Life Sciences Protein Structure and Dynamics ai assisted importance 5/10 scale stated

Predicting the quaternary structure of dimeric protein complexes, which is useful for function analysis, protein engineering and drug design.

Details Source Open-access PDF model: DeepComplex

PyTorch Connectomics: A Scalable and Flexible Segmentation Framework for EM Connectomics

Zudi Lin, Donglai Wei, Jeff William Lichtman, Hanspeter Pfister

arXiv (Cornell University) 2021 cited by 25

Software & Coding Cell Image Analysis Techniques partially solved importance 5/10 scale stated

Reconstructing neurons, synapses, and organelles from nanometer-resolution volumetric microscopy requires scalable segmentation tools that can exploit scarce expert annotations and abundant unlabeled data.

Details Source Open-access PDF model: PyTC (PyTorch-based deep learning framewor...

Microbiome meta-analysis and cross-disease comparison enabled by the SIAMCAT machine-learning toolbox

Jakob Wirbel, Konrad Zych, Morgan Essex, Nicolai Karcher, Ece Kartal, Guillem Salazar, Peer Bork B, Shinichi Sunagawa et al.

bioRxiv (Cold Spring Harbor Laboratory) 2020 cited by 32

Biology & Life Sciences Gut microbiota and health partially solved importance 5/10 scale stated

Machine-learning models built on human microbiome data suffered from scarce metagenomics-specific software, overoptimistic evaluation, and poor generalization across studies.

Details Source Open-access PDF model: SIAMCAT (ML toolbox; specific learner not...

Machine learning applied to retinal image processing for glaucoma detection: review and perspective

Daniele M. S. Barros, Julio C. C. Moura, Cefas Rodrigues Freire, Alexandre Chater Taleb, Ricardo Alexsandro de Medeiros Valentim, Philippi Sedir Grilo de Morais

BioMedical Engineering OnLine 2020 cited by 138

Medicine & Health Retinal Imaging and Analysis ai assisted importance 5/10 scale stated

Detecting and diagnosing glaucoma from retinal images using machine learning classification algorithms.

Details Source Open-access PDF model: not stated in source

Human disease prediction from microbiome data by multiple feature fusion and deep learning

Xingjian Chen, Zifan Zhu, Weitong Zhang, Yuchen Wang, Fuzhou Wang, Jianyi Yang, Ka‐Chun Wong

iScience 2022 cited by 30

Medicine & Health Gut microbiota and health ai assisted importance 5/10 scale stated

Predicting human diseases from microbiome (metagenomic) data suffers information loss and severe overfitting because datasets are high-dimensional with few samples.

Details Source Open-access PDF model: MetaDR (deep learning-based framework)

A hybrid learning strategy for structural damage detection

Lorena Andrade Nunes, Rafaelle Piazzaroli Finotti, Flávio de Souza Barbosa, Alexandre Cury

Structural Health Monitoring 2020 cited by 29

Engineering & Materials Structural Health Monitoring Techniques ai assisted importance 5/10 scale stated

Most structural damage detection techniques fail to automatically identify novelties such as damage or abnormal behavior from dynamic measurements, making human decisions necessary.

Details Source model: not stated in source

LLM-assisted systematic review of large language models in clinical medicine

Sully F. Chen, Anton Alyakin, Andreas Seas, Eunice Yang, Joanne J. Choi, Jin Vivian Lee, Amelia L. Chen, Pranav I. Warman et al.

Nature Medicine 2026 cited by 67

Medicine & Health Artificial Intelligence in Healthcare and Education ai assisted importance 5/10 scale stated

The rapid flood of clinical LLM studies (roughly 3.2 papers per day) makes manual curation and review of the evidence base infeasible.

Details Source Open-access PDF model: not stated in source

Multi-omics approaches to studying gastrointestinal microbiome in the context of precision medicine and machine learning

Jingyue Wu, Stephanie S. Singleton, Urnisha Bhuiyan, Lori Krammer, Raja Mazumder

Frontiers in Molecular Biosciences 2024 cited by 77

Medicine & Health Gut microbiota and health ai assisted importance 5/10 scale stated

Characterising the gut microbiome for precision medicine requires extracting insight from complex multi-omics datasets (metagenomics, metatranscriptomics, glycomics, metabolomics).

Details Source Open-access PDF model: not stated in source