Papers

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Deep Learning for Detecting and Locating Myocardial Infarction by Electrocardiogram: A Literature Review

Ping Xiong, Simon Ming‐Yuen Lee, Ging Chan

Frontiers in Cardiovascular Medicine 2022 cited by 104

Medicine & Health ECG Monitoring and Analysis ai assisted importance 8/10 scale stated

Early detection and localization of myocardial infarction via ECG is life-saving, but population-wide ECG screening is too labor-intensive without automation.

Details Source Open-access PDF model: CNN, LSTM, CRNN, GRU, ResNet, autoencoder...

A Systematic Review of Deep Learning Methodologies Used in the Drug Discovery Process with Emphasis on In Vivo Validation

Nikoletta-Maria Koutroumpa, Konstantinos D. Papavasileiou, Anastasios G. Papadiamantis, Georgia Melagraki, Antreas Afantitis

International Journal of Molecular Sciences 2023 cited by 35

Medicine & Health Computational Drug Discovery Methods ai assisted importance 8/10 scale stated

Drug discovery is long and costly, and deep learning results are often not confirmed experimentally before impacting development.

Details Source Open-access PDF model: not stated in source

The Large Scale Machine Learning in an Artificial Society: Prediction of the Ebola Outbreak in Beijing

Peng Zhang, Bin Chen, Liang Ma, Zhen Li, Zhichao Song, Wei Duan, Xiaogang Qiu

Computational Intelligence and Neuroscience 2015 cited by 26

Medicine & Health Viral Infections and Outbreaks Research ai assisted importance 8/10 scale stated

Governments struggle to predict possible Ebola epidemic scenarios in practice when drawing up emergency plans.

Details Source Open-access PDF model: not stated in source

Virtual Screening Algorithms in Drug Discovery: A Review Focused on Machine and Deep Learning Methods

Tiago Alves de Oliveira, Michel Pires da Silva, Eduardo Habib Bechelane Maia, Alisson Marques da Silva, Alex Gutterres Taranto

Drugs and Drug Candidates 2023 cited by 136

Medicine & Health Computational Drug Discovery Methods ai assisted importance 8/10 scale stated

Drug discovery and repositioning demand high resource investment and are time-consuming for the pharmaceutical industry.

Details Source Open-access PDF model: not stated in source

Accurate de novo design of high-affinity protein-binding macrocycles using deep learning

Stephen Rettie, David Juergens, Victor Adebomi, Yensi Flores Bueso, Qinqin Zhao, Alexandria N. Leveille, Andi Liu, Asim K. Bera et al.

Nature Chemical Biology 2025 cited by 75

Biology & Life Sciences Chemical Synthesis and Analysis solved importance 7/10 scale stated

Designing macrocyclic binders to therapeutic proteins relies on resource-intensive screening with little control over binding mode, and no robust de novo design approaches existed.

Details Source Open-access PDF model: RFpeptides (denoising diffusion-based pipe...

Atomic context-conditioned protein sequence design using LigandMPNN

Justas Dauparas, Gyu Rie Lee, Robert J. Pecoraro, Linna An, Ivan V. Anishchenko, Cameron J. Glasscock, David A. Baker

Nature Methods 2025 cited by 278

Biology & Life Sciences Protein Structure and Dynamics solved importance 7/10 scale stated

Designing protein sequences that correctly interact with small molecules, nucleotides and metals — essential for enzymes, binders and sensors — which prior deep-learning methods could not model.

Details Source Open-access PDF model: LigandMPNN

Accurate proteome-wide missense variant effect prediction with AlphaMissense

Jun Cheng, Guido Novati, Joshua Pan, Clare Bycroft, Akvilė Žemgulytė, Taylor Applebaum, Alexander Pritzel, Lai Hong Wong et al.

Science 2023 cited by 2,095

Medicine & Health Genomics and Rare Diseases partially solved importance 7/10 scale stated

The vast majority of human missense genetic variants have unknown clinical significance, hindering genetic disease diagnosis.

Details Source Open-access PDF model: AlphaMissense (adaptation of AlphaFold)

Multi‐Agent‐Network‐Based Idea Generator for Zinc‐Ion Battery Electrolyte Discovery: A Case Study on Zinc Tetrafluoroborate Hydrate‐Based Deep Eutectic Electrolytes

Matthew James Robson, Shengjun Xu, Zilong Wang, Qing Chen, Francesco Ciucci

Advanced Materials 2025 cited by 29

Engineering & Materials Advanced battery technologies research solved importance 7/10 scale stated

Discovering new aqueous deep eutectic electrolytes for zinc-ion batteries is time-consuming and resource-intensive.

Details Source Open-access PDF model: LLM-based multi-agent network

Integrating deep learning, threading alignments, and a multi‐MSA strategy for high‐quality protein monomer and complex structure prediction in CASP15

Wei Hui Zheng, Qiqige Wuyun, Lydia Freddolino, Yang Zhang

Proteins Structure Function and Bioinformatics 2023 cited by 58

Biology & Life Sciences Protein Structure and Dynamics partially solved importance 7/10 scale stated

Predicting 3D structures of proteins and complexes, especially hard free-modeling targets, remains difficult.

Details Source Open-access PDF model: D-I-TASSER, DMFold-Multimer

Genome-wide prediction of disease variant effects with a deep protein language model

Nadav Brandes, Grant Goldman, Charlotte H. Wang, Chun Ye, Vasilis Ntranos

Nature Genetics 2023 cited by 421

Medicine & Health Genomics and Rare Diseases solved importance 7/10 scale stated

Existing deep-learning methods could not predict the effects of all possible human coding variants, limiting genetic diagnosis and interpretation.

Details Source Open-access PDF model: ESM1b (650-million-parameter protein langu...

Improving de novo protein binder design with deep learning

Nathaniel R. Bennett, Brian Coventry, Inna Goreshnik, Buwei Huang, Aza Allen, Dionne K. Vafeados, Ying Po Peng, Justas Dauparas et al.

Nature Communications 2023 cited by 396

Biology & Life Sciences Protein Structure and Dynamics partially solved importance 7/10 scale stated

De novo design of high-affinity protein binders from target structure alone had a low overall success rate.

Details Source Open-access PDF model: AlphaFold2, RoseTTAFold, ProteinMPNN

De novo design of luciferases using deep learning

Andy Hsien-Wei Yeh, Christoffer Norn, Yakov Kipnis, Doug Tischer, Samuel J. Pellock, Declan Evans, Pengchen Ma, Gyu Rie Lee et al.

Nature 2023 cited by 441

Biology & Life Sciences bioluminescence and chemiluminescence research solved importance 7/10 scale stated

Designing entirely new enzymes from scratch has been limited by a lack of suitable protein structures and the complexity of protein sequence-structure relationships.

Details Source Open-access PDF model: deep-learning 'family-wide hallucination'...

A machine learning model trained on a high-throughput antibacterial screen increases the hit rate of drug discovery

A. S. M. Zisanur Rahman, Chengyou Liu, Hunter Sturm, Andrew M. Hogan, Rebecca L. Davis, Pingzhao Hu, Silvia T. Cardona

PLoS Computational Biology 2022 cited by 47

Medicine & Health Computational Drug Discovery Methods partially solved importance 7/10 scale stated

Screening small molecule libraries for novel antibacterial compounds has a very low success rate (0.87% hit rate against antibiotic-resistant Burkholderia cenocepacia).

Details Source Open-access PDF model: Directed-message passing neural network (D...

Electrocardiogram-based deep learning improves outcome prediction following cardiac resynchronization therapy

Philippe C. Wouters, Rutger R van de Leur, Melle B. Vessies, Antonius M W van Stipdonk, Mohammed Ali Ghossein, Rutger J. Hassink, Pieter A. Doevendans, Pim van der Harst et al.

European Heart Journal 2022 cited by 57

Medicine & Health Cardiac pacing and defibrillation studies partially solved importance 7/10 scale stated

Current guideline ECG criteria poorly predict which patients will benefit from cardiac resynchronization therapy (CRT).

Details Source Open-access PDF model: FactorECG (deep learning-based; architectu...

Deep learning-based kcat prediction enables improved enzyme-constrained model reconstruction

Feiran Li, Le Yuan, Hongzhong Lu, Gang Li, Yu Chen, Martin K. M. Engqvist, Eduard Johannes Kerkhoven, JENS KVIST NIELSEN

Nature Catalysis 2022 cited by 460

Biology & Life Sciences Microbial Metabolic Engineering and Bioproduction solved importance 7/10 scale stated

Experimentally measured enzyme turnover numbers (kcat) are sparse and noisy, limiting genome-scale metabolic modeling across organisms.

Details Source Open-access PDF model: DLKcat (deep learning)

Improving protein tertiary structure prediction by deep learning and distance prediction in CASP14

Jian Liu, Tianqi Wu, Zhiye Guo, Jie Hou, Jianlin Jack Cheng

Proteins Structure Function and Bioinformatics 2021 cited by 31

Biology & Life Sciences Protein Structure and Dynamics partially solved importance 7/10 scale stated

Predicting protein 3D structure from sequence, especially for template-free (ab initio) targets, remains difficult.

Details Source Open-access PDF model: MULTICOM (deep learning-based distance and...

Automatic detection of 39 fundus diseases and conditions in retinal photographs using deep neural networks

Ling‐Ping Cen, Jie Ji, Jianwei Lin, Si-Tong Ju, Hong-Jie Lin, Tai-Ping Li, Yun Wang, Jian-Feng Yang et al.

Nature Communications 2021 cited by 346

Medicine & Health Retinal Imaging and Analysis solved importance 7/10 scale stated

Detecting multiple retinal fundus diseases and conditions early enough to prevent irreversible visual impairment, previously addressed only one disease at a time.

Details Source Open-access PDF model: deep learning platform (DLP), deep neural...

Federated learning for predicting clinical outcomes in patients with COVID-19

Ittai Dayan, Holger R. Roth, Aoxiao Zhong, Ahmed Harouni, Amilcare Gentili, Anas Zainul Abidin, Andy Liu, Anthony Beardsworth Costa et al.

Nature Medicine 2021 cited by 823

Medicine & Health Machine Learning in Healthcare solved importance 7/10 scale stated

Predicting future oxygen needs of symptomatic COVID-19 patients using data from many hospitals without sharing patient data.

Details Source Open-access PDF model: EXAM (electronic medical record chest X-ra...

Classification and mutation prediction based on histopathology H&E images in liver cancer using deep learning

Mingyu Chen, Bin Zhang, Win Topatana, Jiasheng Cao, He-pan Zhu, Sarun Juengpanich, Qijiang Mao, Hong Yu et al.

npj Precision Oncology 2020 cited by 244

Medicine & Health AI in cancer detection ai assisted importance 7/10 scale stated

Grading hepatocellular carcinoma requires visual inspection by experienced pathologists, and mutated gene status normally requires genomic testing.

Details Source Open-access PDF model: Inception V3

Deep‐learning contact‐map guided protein structure prediction in CASP13

Wei Hui Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang

Proteins Structure Function and Bioinformatics 2019 cited by 208

Biology & Life Sciences Protein Structure and Dynamics partially solved importance 7/10 scale stated

Predicting 3D protein structures for targets that lack homologous templates, where conventional pipelines performed poorly.

Details Source Open-access PDF model: ResPRE, NeBcon, C-I-TASSER, C-QUARK

Machine-learning-assisted correction of correlated qubit errors in a topological code

Paul Baireuther, Thomas E. O’Brien, Brian Tarasinski, C. W. J. Beenakker

Quantum 2018 cited by 141

Physics & Astronomy Quantum Computing Algorithms and Architecture ai assisted importance 7/10 scale stated

Fault-tolerant quantum computation requires efficient detection and correction of errors in encoded quantum information, and standard decoders miss correlations between bit-flip and phase-flip errors.

Details Source Open-access PDF model: recurrent neural network with LSTM layers