Crowdsourcing the creation of image segmentation algorithms for connectomics

Ignacio Arganda‐Carreras, Srinivas C. Turaga, Daniel Raimund Berger, Dan Cireşan, Alessandro Giusti, Luca Maria Gambardella, Jürgen Schmidhuber, Dmitry Laptev et al.

Frontiers in Neuroanatomy 2015 article cited by 341

importance 6/10 partially solved Cell Image Analysis Techniques neuroscience / connectomics stage: research

Automating reconstruction of neural circuits via 2D segmentation of electron microscopic brain images.

Automated neural circuit reconstruction is essential for mapping brain connectivity at scale.

An international challenge crowdsourced segmentation algorithms; the winning team used a convolutional network to predict boundary maps, later becoming the field standard.

not stated in source

Deep learning became the accepted standard for EM image segmentation, though the challenge saturated at scoring limits.

Venue Frontiers in Neuroanatomy
Published 2015
Work type article
Authors Ignacio Arganda‐Carreras, Srinivas C. Turaga, Daniel Raimund Berger, Dan Cireşan, Alessandro Giusti, Luca Maria Gambardella, Jürgen Schmidhuber, Dmitry Laptev et al.
Citations 341 (OpenAlex, at import time)
References 46
Model or method convolutional network (deep learning)
Organization not stated in source
Primary source https://doi.org/10.3389/fnana.2015.00142
Open access gold
Keywords connectomics, image segmentation, deep learning, crowdsourcing, electron microscopy
6 / 10

significant — thousands to millions affected

Automating neural circuit reconstruction supports connectomics, a foundational neuroscience effort; abstract gives no scale, but the method became a field standard, indicating broad scientific significance.

Basis: inferred. Judged from the source text, which gives no explicit scale. Stated scale: not stated in source. Method and limits.

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