AI-Driven Deep Learning Techniques in Protein Structure Prediction

Lingtao Chen, Qiaomu Li, Kazi Fahim Ahmad Nasif, Ying Xie, Bobin Deng, Shuteng Niu, Seyedamin Pouriyeh, Zhiyu Dai et al.

International Journal of Molecular Sciences 2024 article cited by 136

importance 8/10 partially solved Protein Structure and Dynamics protein science stage: research

Predicting protein 3D structure from sequence is a long-standing computational challenge important for understanding function.

Protein structures underpin drug design and understanding of disease and biological function.

This review surveys AI frameworks such as AlphaFold, RoseTTAFold and ProteinBERT, and their integration into established tools, comparing performance via CASP14/CASP15 rankings.

not stated in source

Documents AI's central role in advancing protein structure prediction, benchmarked via CASP rankings.

Venue International Journal of Molecular Sciences
Published 2024
Work type article
Authors Lingtao Chen, Qiaomu Li, Kazi Fahim Ahmad Nasif, Ying Xie, Bobin Deng, Shuteng Niu, Seyedamin Pouriyeh, Zhiyu Dai et al.
Citations 136 (OpenAlex, at import time)
References 130
Model or method AlphaFold (1-3), RoseTTAFold, ProteinBERT
Organization not stated in source
Primary source https://doi.org/10.3390/ijms25158426
Open access gold
Keywords protein structure prediction, AlphaFold, deep learning, CASP, review
8 / 10

major — millions of lives, an industry or a field

Protein structure prediction is a foundational scientific field underpinning understanding of function and behavior; abstract gives no quantified scale of beneficiaries.

Basis: inferred. Judged from the source text, which gives no explicit scale. Stated scale: not stated in source. Method and limits.

# Paper Year Citations Importance
1 AlphaFold Protein Structure Database: massively expanding the structural coverage of protein-sequence space with high-accuracy models
Mihály Váradi, Stephen Anyango, Mandar Deshpande, Sreenath Sasidharan...
2021 7,782
9
2 Evolutionary-scale prediction of atomic-level protein structure with a language model
Zeming Lin, Halil Akin, Roshan Rao, Brian Hie, Zhongkai Zhu, Wenting L...
2023 5,455
9
3 Accurate prediction of protein structures and interactions using a three-track neural network
Minkyung Baek, Frank DiMaio, Ivan V. Anishchenko, Justas Dauparas, Ser...
2021 5,468
9
4 De novo design of protein structure and function with RFdiffusion
Joseph L. Watson, David Juergens, Nathaniel R. Bennett, Brian L. Tripp...
2023 2,294
9
5 Structure Prediction and Computational Protein Design for Efficient Biocatalysts and Bioactive Proteins
Rebecca Buller, Jiřı́ Damborský, Donald Hilvert, Uwe T. Bornscheuer
2024 40
9