Easy-Prime: a machine learning–based prime editor design tool

Yichao Li, Jingjing Chen, Shengdar Q. Tsai, Yong Cheng

Genome biology 2021 article cited by 68

importance 7/10 partially solved CRISPR and Genetic Engineering genome editing stage: research open-source model

Designing highly efficient prime editors for making precise DNA edits remains challenging.

Efficient prime editing is needed to install disease-associated genetic variants precisely.

Developed Easy-Prime, a machine learning program trained on multiple published data sources that captures known and novel features such as RNA folding to optimize prime editor designs.

Optimized PE design for installation of 89.5% of 152,351 GWAS variants.

Peer-reviewed tool released as command-line program and public web server, supporting usability and adoption.

Venue Genome biology
Published 2021
Work type article
Authors Yichao Li, Jingjing Chen, Shengdar Q. Tsai, Yong Cheng
Citations 68 (OpenAlex, at import time)
References 37
Model or method not stated in source
Organization not stated in source
Primary source https://doi.org/10.1186/s13059-021-02458-0
Open access gold
Keywords prime editing, machine learning, GWAS variants, editor design, genome editing
7 / 10

significant — thousands to millions affected

Prime editing is a foundational genome-editing capability; abstract quantifies optimized designs for installing 89.5% of 152,351 GWAS variants, supporting broad research impact.

Basis: stated. The source itself states the scale. Stated scale: 89.5% of 152,351 GWAS variants. Method and limits.

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